PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g083670.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family AP2
Protein Properties Length: 325aa    MW: 34726.1 Da    PI: 6.3223
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g083670.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.51.8e-1469118155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s ++G+r +  +g+Wv+eIr+p++   ++r++lg++  +e+Aa+a++ a+++l+g
  Csa11g083670.1  69 SFFRGIRLR--NGKWVSEIREPRK---TTRIWLGTYPVPEMAAAAYDVAALALKG 118
                     5699**975..6*********843...5************************987 PP

2AP245.51.8e-14165214155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s ++G+r +  +g+Wv+eIr+p++   ++r++lg++  +e+Aa+a++ a+++l+g
  Csa11g083670.1 165 SFFRGIRLR--NGKWVSEIREPRK---TTRIWLGTYPVPEMAAAAYDVAALALKG 214
                     5699**975..6*********843...5************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-1769126IPR016177DNA-binding domain
SMARTSM003802.4E-2570132IPR001471AP2/ERF domain
PROSITE profilePS5103219.24370126IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-2471126IPR001471AP2/ERF domain
PfamPF008474.3E-871118IPR001471AP2/ERF domain
CDDcd000187.78E-1571126No hitNo description
SuperFamilySSF541717.85E-17165222IPR016177DNA-binding domain
SMARTSM003802.4E-25166228IPR001471AP2/ERF domain
PROSITE profilePS5103219.243166222IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-24167222IPR001471AP2/ERF domain
PfamPF008474.3E-8167214IPR001471AP2/ERF domain
CDDcd000187.78E-15167222No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MSNTKSPTTG NQETTTSSRE VSIALPSKPS DHSPQSSPSS SSSPRPSTLA SAGGSPARRT  60
GTGLSGKHSF FRGIRLRNGK WVSEIREPRK TTRIWLGTYP VPEMAAAAYD VAALALKGSD  120
AVLNFPGLAL TYVPPVSNSA ADIRAAASKA AEMKQPDPGE AEKHSFFRGI RLRNGKWVSE  180
IREPRKTTRI WLGTYPVPEM AAAAYDVAAL ALKGSDAVLN FPGLALTYVP PVSNSAADIR  240
AAASKAAEMK QPDPGEAEKV LDPTGQPGKE EEVVVEVEEG FEFMDEEEML NMPTLLTEMA  300
EGMLMSPPRM XEALPNRLLS NQLV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0154781e-125AB015478.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSG15.
GenBankAK1764641e-125AK176464.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL24-25-F17.
GenBankCP0026881e-125CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010442714.14e-84PREDICTED: ethylene-responsive transcription factor ERF025-like
SwissprotQ9FJ906e-75ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLD7MRL71e-74D7MRL7_ARALL; AP2 domain-containing protein
STRINGscaffold_801641.13e-74(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134571424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.14e-53ERF family protein